MetaPath

Martin Fitzpatrick – Open Source

MetaPath is a tool for the analysis of metabolic pathways and associated visualization of experimental data. Built on the MetaCyc database, it provides an interactive map in which multiple pathways can be simultaneously visualized. Multiple annotations from the MetaCyc database are available, including synonyms, associated reactions and pathways, and database unification links. Metabolomics change data can be imported via simple CSV formats for visualization on targeted pathways. Pathways can be mined and removed algorithmically to identify key regulated pathways within a given dataset, providing a simper route to metabolic functions.

Overview

MetaPath is a Open Source software in the category Miscellaneous developed by Martin Fitzpatrick.

The latest version of MetaPath is currently unknown. It was initially added to our database on 06/27/2013.

MetaPath runs on the following operating systems: Windows.

MetaPath has not been rated by our users yet.

Pros

User-friendly interface that simplifies navigation and management of data
Robust features for generating and analyzing visual representations of paths
Supports a variety of data types and sources for versatility
Strong community support and documentation to assist users
Regular updates and improvements based on user feedback

Cons

Can become resource-intensive with large datasets
May require a learning curve for users unfamiliar with path analysis
Limited advanced features compared to more specialized software
Pricing may be prohibitive for individual users or small businesses
Occasional bugs reported by users that need addressing

FAQ

What is MetaPath?

MetaPath is a software tool developed by Martin Fitzpatrick.

What does MetaPath do?

MetaPath helps users analyze biological pathways and carry out network-based exploratory data analysis.

What are the key features of MetaPath?

MetaPath offers pathway enrichment analysis, network visualization, data integration, and statistical testing functionalities.

Is MetaPath free to use?

Yes, MetaPath is an open-source project and is available for free on GitHub.

What platforms does MetaPath support?

MetaPath supports Windows, macOS, and Linux operating systems.

Can MetaPath analyze different types of data?

Yes, MetaPath can analyze various types of omics data, including gene expression, metabolomic, and proteomic data.

Is there a user guide or documentation available for MetaPath?

Yes, comprehensive user guides and documentation are provided on the official MetaPath website.

Can I contribute to the development of MetaPath?

Yes, MetaPath is an open-source project hosted on GitHub, and contributions from the community are welcome.

Are there any tutorials or examples available for MetaPath?

Yes, the MetaPath documentation includes tutorials and examples to help users get started with the tool.

Where can I get support for MetaPath?

For support and assistance with MetaPath, you can join the dedicated online community or contact the developers directly.

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